PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 490aa    MW: 53481.4 Da    PI: 7.3907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315466genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05133155123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+Cg+sF++ +   +H  ++
  MDP0000315466 133 FECPICGQSFRSEDXVSVHVDSC 155
                    89*************99998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.4E-92165No hitNo description
CDDcd092122.19E-21187282No hitNo description
SuperFamilySSF1435034.97E-18197279IPR018997PUB domain
SMARTSM005804.2E-19200267IPR018997PUB domain
PfamPF094098.2E-16201274IPR018997PUB domain
SuperFamilySSF542363.1E-12344457IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.4E-9361455No hitNo description
PROSITE profilePS5003311.653373457IPR001012UBX domain
PfamPF007894.7E-6374424IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDDMKDKFKG FMKTTFSSSS SAKFKGQGRV LGSSSSSGTA DSVLTRPKQT PQSNPKPLPN  60
SNSNSSVASP NPRPSPQKAQ ILDQKKTQIP DQSKAEPSGN SKPDRKTDSG FDPFDSLITP  120
GKRSQNGFTL NVFECPICGQ SFRSEDXVSV HVDSCVNAPV EHKSVEGVGV SGSPDNGSDS  180
SRSDLEAXIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRKIRMSNPK IREAIGEVVG  240
GIELLEFVGF ELKEEDGEMW ALMGVPKEEQ ISLMKKAIAL LEPPKVQEVD ILPSIASLNV  300
DEPVEPKKVD RQTRVFFSVS ESMAARIEVP ASFYNLTATE LKREAEMRKK KIEDSQMLIP  360
KSFREKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL  420
LNPVAIKRRV IPHFPAAGEK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNELLEISEP  480
LTSGSAVAPV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.81460.0bud| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351535.10.0PREDICTED: UBX domain-containing protein 6
SwissprotQ9ZU931e-180PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLM5XEF80.0M5XEF8_PRUPE; Uncharacterized protein
STRINGVIT_01s0011g05570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529